Publications

*denotes student author

62. Rüegg, J., K.B. Gido, K.J. Farrell*, M.B. Flinn, A. Argerich, E. Garcia, A.D. Rosemond, B. Penaluna, C. Song*, M.R. Whiles, C.L. Baker*, B. Bowden, M. Douglas, T.K. Harms, J.B. Jones, J.S. Kominoski, W.H. McDowell, D. McMaster, S.S. Parker*, M.T. Trentman*, W.M. Wollheim. Aquatic consumer biomass, richness, and trophic composition within headwater stream networks depends on relative stream size and biome. Global Ecology and Biogeography (in review).

61. Kominoski, J.S., E.E. Gaiser, E. Castañeda-Moya, S.E. Davis, S. Dessu, D.Y. Lee, L. Marazzi, V.H. Rivera-Monroy, A. Sola*, D. Surratt, R. Travieso, and T.G. Troxler. Sea-level rise and freshwater availability drive spatio-temporal synchrony of phosphorus and bacterioplankton in the Florida Coastal Everglades. Limnology and Oceanography (in prep).

60. *Wilson, B.J., S.M. Servais*, S.P. Charles*, V. Mazzei*, E.E. Gaiser, J.S. Kominoski, J.H. Richards, and T.G. Troxler. Balancing nutrient subsidy and salinity stress: short- and long-term effects of saltwater intrusion on freshwater wetland ecosystem functions. Ecology (in review).

59. *Wilson, B.J., S.M. Servais*, V. Mazzei*. L. Bauman, S.E. Davis, E.E. Gaiser, S. Kelly, J.S. Kominoski, C.J. Madden, J.H. Richards, D. Rudnick, F. Sklar, J. Stachelek, T.G. Troxler. Salinity pulses interact with seasonal dry-down to increase ecosystem carbon loss in Florida Everglades coastal marshes. Ecological Applications (in review).

58. Marazzi, L., C.M. Finlayson, P.A. Gell, P. Julian, J.S. Kominoski, and E.E. Gaiser. Balancing wetland restoration benefits to people and nature. Solutions (in review).

57.*Charles, S.P., J.S. Kominoski, A.R. Armitage, H. Guo, C. Weaver*, and S.C. Pennings. Mangroves increase organic carbon storage in an experimental marsh-mangrove gradient despite reduced marine subsidies. Ecology (in review).

56. Tully, K., K. Gedan, A. Strong, E. Bernhardt, T. BenDor, M. Mitchell, J.S. Kominoski, T. Jordan, S. Neubauer, N. Weston. The invisible flood: the chemistry, ecology, and consequences of saltwater intrusion. Nature Sustainability (in review).

55. *Servais, S.M., J.S. Kominoski, S.P. Charles*, E.E. Gaiser, V. Mazzei*, T.G. Troxler, B.J. Wilson*. Quantifying microbially mediated of soil carbon loss from saltwater intrusion into freshwater wetlands: experimental tests of elevated salinity and phosphorus. Geoderma (in review).

54. *Wilson, B.J., S.M. Servais*, S.P. Charles*, S.E. Davis, E.E. Gaiser, J.S. Kominoski , J. Richards, T.G. Troxler. Quantifying saltwater intrusion and inundation effects on plant-soil carbon cycling in brackish coastal wetlands. Estuaries and Coasts (in review).

53. *Farrell, K.J., A.D. Rosemond, J. Rüegg, and J.S. Kominoski. Spatial and temporal patterns in temperature, light, and organic matter drive metabolism and nutrient uptake throughout a forest headwater river network. Freshwater Science (in review).

52. *Servais, S.M., J.S. Kominoski, S.E. Davis, E.E. Gaiser, J. Pachόn*, and T.G. Troxler. Interactive effects of defoliation and phosphorus enrichment on above- and below-ground biogeochemical cycling in experimental mangrove wetlands. Wetlands (in revision).

51. Kominoski, J.S., E.E. Gaiser, S.G. Baer. Advancing theories of ecosystem development through long-term ecological research. BioScience (in press).

50. *Mazzei, V., E.E. Gaiser, J.S. Kominoski, B.J. Wilson*, S.M. Servais*, L. Bauman, S.E. Davis, S. Kelly, F. Sklar, D. Rudnick, J. Stachelek, T.G. Troxler. Functional and compositional responses of periphyton mats to simulated saltwater intrusion in the southern Everglades. Estuaries and Coasts (in press).

49. Troxler, T.G., G. Starr, J.N. Boyer, J.D. Fuentes, R. Jaffe 5, S. Malone, J. Barr, S. Davis, L. Collado-Vides, J. Breithaupt, A. Saha, R. Chambers, C. Madden, J.D. Smoak, J. Fourqurean, G. Koch, J.S. Kominoski, L. Scinto, S. Oberbauer, V. Rivera-Monroy, E. Castaneda, N. Schulte, S.P. Charles, J. Richards, D. Rudnick, and K. Whelan. Carbon Cycles in the Florida Coastal Everglades Social-Ecological System Across Scales. In Childers, D.L. Childers, E.E. Gaiser, and L. Ogden (Eds). The Coastal Everglades: The Dynamics of Social-Ecological Transformation in the South Florida Landscape. Oxford University Press (in press).

48. Kominoski, J.S., J. Rehage, W. Anderson, R. Boecek, H. Briceño, M. Bush, T. Dreschel, M. Heithaus, R. Jaffé, L. Larsen, P. Matich, C. McVoy, A. Rosenblatt, and T. Troxler. Ecosystem Fragmentation and Connectivity – Legacies and Future Implications of a Restored Everglades. In Childers, D.L. Childers, E.E. Gaiser, and L. Ogden (Eds). The Coastal Everglades: The Dynamics of Social-Ecological Transformation in the South Florida Landscape. Oxford University Press (in press).

47. Davis, S.E., R. Boucek, E. Castañeda-Moya, S. Dessu, E.E. Gaiser, J.S. Kominoski, J.P. Sah, D. Surratt, and T.G. Troxler. Episodic disturbances drive nutrient dynamics along freshwater-to-estuary gradients in a subtropical wetland. Ecosphere (in press).

46.  *Song, C., W.K. Dodds, J. Ruegg, A. Argerich, C.L. Baker*, W.B. Bowden, M.M. Douglas, K.J. Farrell*, M.B. Flinn, E.A. Garcia, A.M. Helton, T.K. Harms, S. Jia, J.B. Jones, L.E. Koenig*, J.S. Kominoski, W.H. McDowell, D. McMaster, S.P. Parker*, A.D. Rosemond, C.M. Rung, K.R. Sheehan, M.T. Trentman*, M.R. Whiles, W.M. Wollheim, F. Ballantyne. Warming induces asymmetric convergence of stream metabolic balance. Nature Geoscience (in press). https://www.nature.com/articles/s41561-018-0125-5

45. *Farrell, K.J., A.D. Rosemond, J.S. Kominoski, S.M. Bonjour*, J. Rüegg, L.E. Koenig*, C.L. Baker*, M.T. Trentman*, and T.K. Harms. Variation in detrital resource stoichiometry signals differential carbon to nutrient limitation for stream consumers across biomes. Ecosystems (in press). https://doi.org/10.1007/s10021-018-0247-z

44. McPhillips, L. E., H. Chang, M. V. Chester, Y. Depietri, E. Friedman, N. B. Grimm, J. S. Kominoski, T. McPhearson, P. Méndez-Lázaro, E. J. Rosi, and J. Shafiei Shiva. 2018. Defining extreme events: a cross-disciplinary review. Earth’s Future 6:441-455.  https://doi.org/10.1002/2017EF000686 

43. *Sola, A., L. Marazzi, M.M. Flores, J.S. Kominoski, and E.E. Gaiser. 2018. Effects of drying and rewetting on benthic microbial mat stoichiometry. Water 10:105. doi:10.3390/w10020105

42. Dessu, S.B., R.M. Price, T.G. Troxler, J.S. Kominoski. 2018. Effects of sea-level rise and freshwater management on long-term water levels and water quality in the Florida Coastal Everglades. Journal of Environmental Management 211:164-176. https://doi.org/10.1016/j.jenvman.2018.01.025

41. Kominoski, J.S., A.Ruhí, M.M. Hagler, K. Petersen*, J.L. Sabo, T. Sinha, S. Arumugam, J. Olden. 2018. Patterns and drivers of fish extirpations in rivers of the American Southwest and Southeast. Global Change Biology 24:1175-1185. https://doi.org/10.1111/gcb.13940

40. Kominoski, J.S., A.D. Rosemond, J.P. Benstead, V. Gulis, D.W.P. Manning*. 2018. Experimental nitrogen and phosphorus additions increase rates of stream ecosystem respiration and carbon loss. Limnology and Oceanography 63:22-36.  https://doi.org/10.1002/lno.10610

39. *Manning, D.W.P., A.D. Rosemond, J.P. Benstead, V. Gulis, and J.S. Kominoski. 2018. Nutrients and temperature additively increase stream microbial respiration. Global Change Biology 24:e233-e247. https://doi.org/10.1111/gcb.13906

38. Welti, N., M. Striebel, A.J. Ulseth, W.F. Cross, S. DeVilbiss, P.M. Glibert, L. Guo, A.G. Hirst, J. Hood, J.S. Kominoski, K.L. MacNeill, A.S. Mehring, J.R. Welter, H. Hillebrand. 2017. Bridging food webs, ecosystem metabolism, and biogeochemistry using ecological stoichiometry theory. Frontiers in Microbiology 8:1298.                    https://doi.org/10.3389/fmicb.2017.01298

37. Martínez, A. J.S. Kominoski, A. Larrañaga. 2017. Leaf-litter leachate concentration promotes heterotrophy in freshwater biofilms: understanding consequences of water scarcity. Science of the Total Environment 599-600:1677-1684. https://doi.org/10.1016/j.scitotenv.2017.05.043

36. Arumugam, S., J.L. Sabo, K.L. Larson, S.B. Seo*, T. Sinha, R. Bhowmik*, A. Ruhi Vidal, K. Kunkel, G. Mahinthakumar, E.Z. Berglund, J.S. Kominoski. 2017. Synthesis of public water supply use in the U.S.: spatio-temporal patterns and socio-economic control. Earth’s Future 5:771-788. https://doi.org/10.1002/2016EF000511

35. Follstad Shah, J., J.S. Kominoski, M. Ardon, W. Dodds, M. Gessner, N. Griffiths, C. Hawkins, A. Lecerf, C. LeRoy, D. Manning*, S. Johnson, A. Rosemond, R. Sinsabaugh, C. Swan, J.Webster, and L. Zeglin. 2017. Global synthesis of the temperature sensitivity of leaf litter breakdown in streams and rivers. Global Change Biology 23:3064-3075.  https://doi.org/10.1111/gcb.13609

34. Guo, H., C. Weaver*, S. Charles*, A. Whitt*, S. Dastidar*, P. D’Odorico, J.D. Fuentes, J.S. Kominoski, A.R. Armitage, and S.C. Pennings. 2017. Coastal regime shifts: Rapid responses of coastal wetlands to changes in mangrove cover. Ecology 98:762–772.  https://doi.org/10.1002/ecy.1698

33. *Manning, D.W.P., A.D. Rosemond, V. Gulis, J.P. Benstead, J.S. Kominoski, and J.C. Maerz. 2016. Convergence of detrital stoichiometry predicts thresholds of nutrient-stimulated breakdown in streams. Ecological Applications 26:1745-1757.  https://doi.org/10.1890/15-1217.1

32. Rüegg, J., W. Dodds, M. Daniels, K. Sheehan, C. Baker*, W. Bowden, K. Farrell*, M. Flinn, T. Harms, J. Jones, L. Koenig*, J.S. Kominoski, W. McDowell, S. Parker*, A. Rosemond, M. Trentman*, M. Whiles, and W. Wollheim. 2016. Baseflow physical characteristics differ at multiple spatial scales in stream networks across diverse biomes. Landscape Ecology 31:119-136. https://doi.org/10.1007/s10980-015-0289-y

31. Rosemond, A.D., J.P. Benstead, P.M. Bumpers*, V. Gulis, J.S. Kominoski, D.W.P. Manning*, K. Suberkropp, J.B. Wallace. 2015. Experimental nutrient additions accelerate terrestrial carbon loss from stream ecosystems. Science 347:1142-1145. http://science.sciencemag.org/content/347/6226/1142   F100Prime Recommended

30. *Manning, D.W.P., A.D. Rosemond, J.S. Kominoski, V.Gulis, J.P. Benstead, J.C. Maerz. 2015.Detrital stoichiometry as a critical nexus for the effects of streamwater nutrients on leaf litter breakdown rates. Ecology 96:2214-2224. http://dx.doi.org/10.1890/14-1582.1

29. Kominoski, J.S., A.D. Rosemond, J.P. Benstead, V. Gulis, J.C. Maerz, D.W.P. Manning*. 2015. Low-to-moderate nitrogen and phosphorus concentrations accelerate microbially driven litter breakdown rates. Ecological Applications 25:156-165. http://dx.doi.org/10.1890/14-1113.1

28. Trexler, J.C., E.E. Gaiser, J.S. Kominoski, J.L. Sanchez*. 2014. The role of
periphyton mats in consumer community structure and function in calcareous wetlands: lessons from the Everglades. In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

27. *Lovatt, C., J.S. Kominoski, T. Sakamaki, B. Macleod*, J.S. Richardson. 2014. Leaf-litter leachate and light interactively enhance accrual of stream biofilms. Fundamental and Applied Limnology 184:297-306. http://dx.doi.org/10.1127/1863-9135/2014/0602

26. Heffernan, J.B., P.A. Soranno, M.J. Angilletta Jr, L.B. Buckley, D.S. Gruner, T.H. Keitt, J.R. Kellner, J.S. Kominoski, A.V. Rocha, J. Xiao, T.K. Harms, S.J. Goring, L.E. Koenig*, W.H. McDowell, H. Powell, A.D. Richardson, C.A. Stow, R. Vargas, and K.C. Weathers. 2014. Macrosystems ecology: understanding ecological patterns and processes at continental scales. Frontiers in Ecology and the Environment 12: 5–14. http://dx.doi.org/10.1890/130017

25. Goring, S.J., K.C. Weathers, W.K. Dodds, P.A. Soranno, L.C. Sweet, K.S. Cheruvelil, J.S. Kominoski, J. Rüegg, A.M. Thorn, and R.M. Utz. 2014. Improving the culture of interdisciplinary collaboration in ecology by expanding measures of success. Frontiers in Ecology and the Environment 12: 39–47. http://dx.doi.org/10.1890/120370

24. Troxler, T., E.E. Gaiser, J.G. Barr, J.D. Fuentes, R. Jaffe, D.L. Childers, L. Collado-Vides, V.H. Rivera-Monroy, E. Castaneda-Moya, W.T. Anderson, R.M. Chambers, M. Chen, C. Coronado-Molina, S.E. Davis, V. Engel, C. Fitz, J.W. Fourqurean, T.A. Frankovich, J.S. Kominoski, C.J. Madden, S.L. Malone, S. Oberbauer, P.C. Olivas, J.H. Richards, C.J. Saunders, J. Schedlbauer, L.J. Scinto, F.H. Sklar, T.J. Smith, J.M. Smoak, G. Starr, R.R. Twilley, K.R.T. Whelan 2013. Integrated carbon budget models for the Everglades terrestrial-coastal-oceanic gradient: current status and needs for inter-site comparisons. Oceanography 26:98-107. http://dx.doi.org/10.5670/oceanog.2013.51

23. Kominoski, J.S., J.J. Follstad Shah, C. Canhoto, D.G. Fischer, D. Giling*, E. González, N.A. Griffiths, A. Larrañaga, C.J. LeRoy, M.M. Mineau, Y.R. McElarney, S.M. Shirley, C.M. Swan, S.D. Tiegs. 2013. Forecasting functional implications of global changes in riparian plant communities. Frontiers in Ecology and the Environment 11:423-432. http://dx.doi.org/10.1890/120056

22. Prather, C.M., S. Pelini, A.N. Laws, E. Rivest, M. Woltz, C.P. Bloch, I. Del Torro, C-K. Ho, J.S. Kominoski, T.A.S. Newbold, S. Parsons. 2013. Invertebrates, ecosystem services and climate change. Biological Reviews 88:327-344. DOI: 10.1111/brv.12002

21. Swan, C.M and J.S. Kominoski. 2012. Biodiversity and Ecosystem Function of Decomposition. In: eLS 2012, John Wiley & Sons, Ltd: Chichester.  http://www.els.net/WileyCDA/ElsArticle/refId-a0023601.html

20. Kominoski, J.S., S. Larrañaga, J.S. Richardson. 2012. Invertebrate feeding and emergence timing vary among streams along a gradient of riparian forest composition. Freshwater Biology 57: 759-772. DOI: 10.1111/j.1365-2427.2012.02740.x

Corrigendum: Invertebrate feeding and emergence timing vary among streams along a gradient of riparian forest composition. Freshwater Biology, 57, 759–772. DOI: 10.1111/j.1365-2427.2012.02740.x

19. Kominoski, J.S., A.D. Rosemond. 2012. Conservation from the ‘bottom up’: Forecasting effects of global change on dynamics of organic matter and management needs for river networks. Freshwater Science 31: 51-68. http://www.jstor.org/stable/10.1899/10-160.1

18. Kominoski, J.S. 2011. Review: The Challenges of Biodiversity Science. The Quarterly Review of Biology, 86:133.

17. Lagrue, C., J.S. Kominoski, M. Danger, J.-M. Baudoin, S. Lamothe, D. Lambrigot, A. Lecerf. 2011. Experimental shading alters leaf litter breakdown in streams of contrasting riparian canopy cover. Freshwater Biology 56: 2059-2069.  DOI: 10.1111/j.1365-2427.2011.02637.x

16. *Bretherton, W.D., J.S. Kominoski, C.J. LeRoy, D.G. Fischer. 2011. Salmon carcasses alter leaf litter species diversity effects on in-stream decomposition. Canadian Journal of Fisheries and Aquatic Sciences, 68:1495-1506. DOI: 10.1139/f2011-082

15. Lecerf A., G. Marie, J.S. Kominoski, C. LeRoy, C. Bernardet, C.M. Swan. 2011. Incubation time, functional litter diversity, and ecosystem characteristics predict nonadditive litter mixing effects on decomposition. Ecology, 92:160-169. http://dx.doi.org/10.1890/10-0315.1

14. Kominoski, J.S., L.B. Marczak, J.S. Richardson. 2011. Riparian forest composition affects stream litter decomposition despite similar microbial and invertebrate communities. Ecology, 92:151-159. http://dx.doi.org/10.1890/10-0028.1

13. Sabo, J.S., T. Sinha, L.C. Bowling, G.H.W. Schoups, W.W. Wallender, M.E. Campana, K.A. Cherkauer, P. Fuller, W.L. Graf, J.W. Hopmans, J.S. Kominoski, C. Taylor, S.W. Trimble, R.H. Webb, E.E. Wohl. 2010. Reclaiming freshwater sustainability in the Cadillac Desert. Proceedings of the National Academy of Sciences, USA, 107:21236-21269. doi: 10.1073/pnas.1009734108  

12. Ball, B.A., J.S. Kominoski, H.E. Adams, S.E. Jones, E.S. Kane, T.D. Loecke, W. Mahaney, J. Martina, C.M. Prather, T.M.P. Robinson, C.T. Solomon. 2010. Direct and terrestrial vegetation-mediated effects of environmental change on aquatic ecosystem processes. BioScience, 60:590-601. https://doi.org/10.1525/bio.2010.60.8.5

11. Lecerf, A., J.S. Kominoski. 2010. Functional leaf traits and biodiversity effects on litter decomposition in a stream: Comment. Ecology 91:1867-1869. http://dx.doi.org/10.1890/0012-9658-91.6.1867

10. Rosemond, A.D., C.M. Swan, J.S. Kominoski, S.E. Dye. 2010. Non-additive effects of litter mixing are suppressed in a nutrient-enriched stream. Oikos 119:326-336. DOI: 10.1111/j.1600-0706.2009.17904.x

9. Gonzalez, A., J.S. Kominoski, M. Danger, S. Ishida, N. Iwai, A. Rubach. 2010. Can Ecological Stoichiometry explain patterns of biological invasions? Oikos 119:779-790. DOI: 10.1111/j.1600-0706.2009.18549.x

8. Kominoski, J.S., T.J. Hoellein, C.J. LeRoy, C.M. Pringle, C.M. Swan. 2010. Beyond species richness: expanding biodiversity-ecosystem functioning theory in detritus-based streams. River Research and Applications 26:67-75. DOI: 10.1002/rra.1285

7. Kominoski, J.S., C.M. Pringle. 2009. Resource-consumer diversity: testing effects of leaf litter species diversity on stream macroinvertebrate communities. Freshwater Biology 54:1461-1473. DOI: 10.1111/j.1365-2427.2009.02196.x

6. Kominoski, J.S., T.J. Hoellein, J.J. Kelly, C.M. Pringle. 2009. Does mixing litter of different qualities alter stream microbial diversity and functioning on individual litter species? Oikos 118:457-463. DOI: 10.1111/j.1600-0706.2008.17222.x

5. Ball, B.A., M.D. Hunter, J.S. Kominoski, C.M. Swan, M.A. Bradford. 2008. Consequences of non-random species loss on decomposition dynamics: Evidence for additive and non-additive effects. Journal of Ecology 96:303-313. DOI: 10.1111/j.1365-2745.2007.01346.x

4. Kominoski, J.S., C.M. Pringle, B.A. Ball. 2008. Invasive woolly adelgid appears to drive seasonal hemlock and carcass inputs to a detritus-based stream. Verhandlungen Internationale Vereinigung für theoretische und angewandte Limnologie 30:109-112.  https://doi.org/10.1080/03680770.2008.11902095

3. Kominoski, J.S., B.J. Mattsson, B. Rashleigh, S.L. Eggert. 2007. Using long-term chemical and biological indicators to assess stream health in the Upper Oconee River watershed. Proceedings of the 2007 Georgia Water Resources Conference.  http://hdl.handle.net/1853/47965

2. Kominoski, J.S., P.A. Moore, R.G. Wetzel, N.C. Tuchman. 2007. Elevated CO2 alters leaf-litter-derived dissolved organic carbon: effects on stream periphyton and crayfish feeding preference. Journal of the North American Benthological Society 26:662-671. http://dx.doi.org/10.1899/07-002.1

1. Kominoski, J.S., C.M. Pringle, B.A. Ball, M.A. Bradford, D.C. Coleman, D.B. Hall, M.D. Hunter. 2007. Nonadditive effects of leaf litter species diversity on breakdown dynamics in a detritus-based stream. Ecology 88:1167-1176. http://dx.doi.org/10.1890/06-0674

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